PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05367.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 787aa    MW: 86766 Da    PI: 9.7927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05367.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.1e-151362255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l+ 
  Rsa1.0_05367.1_g00003.1 13 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVAFYCLHR 62
                             8*****998.**********943...5********************9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.66E-231276No hitNo description
PROSITE profilePS5103220.8241374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-231374IPR001471AP2/ERF domain
PfamPF008477.6E-71360IPR001471AP2/ERF domain
SMARTSM003806.4E-271380IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-151366IPR016177DNA-binding domain
PRINTSPR003677.9E-81425IPR001471AP2/ERF domain
PRINTSPR003677.9E-83652IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.200.202.3E-37195249No hitNo description
SuperFamilySSF561125.93E-92283579IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.202.3E-37284399No hitNo description
PROSITE profilePS5001146.054290574IPR000719Protein kinase domain
PfamPF000696.6E-69290574IPR000719Protein kinase domain
SMARTSM002203.3E-94290574IPR000719Protein kinase domain
CDDcd078407.54E-160290574No hitNo description
PROSITE patternPS001070296319IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.105.8E-50400577No hitNo description
PROSITE patternPS001080410422IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MDPRDGGETH QAKYKGIRRR KWGKWVSEIR VPGTRERLWL GSFSTAEGAA VAHDVAFYCL  60
HRPSSLDNEA FNFPHLLQPS LASNTSPKSI QKAASDAGMA IDAGFSVNNE RGSGGGEDRS  120
SMTNTEEDSE RETLNISVSL NGCLSVMGCI CATARSPNAA VTNTDLLDSS KSILQLLPPP  180
PPSSSSKTEG SFTRPNSSAS ITVVANGYPV ARRPSTSSDR NSNNPVVIVG APTRDPTRRV  240
TAMPVAQPTQ KTESLTGNKT EPTSGEWPSW LASVAGEAIK GWTPRCADSY EKLDKIGQGT  300
YSSVYKARDL ETGKIVAMKK VRFVNMDPES VRFMAREILI LRKLDHPNVM KLEGLVTSRL  360
SGSLYLVFEY MEHDLAGLAA TPGIKFSETQ IKCYMQQLFR GLEHCHRRGI LHRDIKGSNL  420
LINNEGVLKI GDFGLANFYR GDGDLQLTSR VVTLWYRAPE LLLGATEYGP AIDLWSAGCI  480
LTELFAGKPI MPGRTEVEQM HKIFKLCGSP SEDYWRRETL PLATSFKPSH PYKAVLAETF  540
SHFTVSALTL IHKLLAIEPE KRGSSASALR SEFFTTEPLP ANPSSLPRYP PSKELDAKLR  600
NEEARKVKAE DNKRRGGETV TRGRQKDVKT AQTPEFIAAG QSKVTCISHK FKTDEEGGTG  660
FRIEPPRRGI QQNGYAHAST MVHPSVSDTE WNRGGSIKRQ TNAELKSRIT QTGDLSGDSC  720
RRGSSRDYST GNAPRKNRIH YSGPLMPPGG NLDEMLKEHE KQIQQAVRKA RVEKSGQQQR  780
YRGRDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5efq_A8e-872826115344Cyclin-dependent kinase 13
5efq_C8e-872826115344Cyclin-dependent kinase 13
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-112AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-112AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankCP0026841e-112CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105819.10.0PREDICTED: probable serine/threonine-protein kinase At1g09600
RefseqXP_013649478.10.0PREDICTED: probable serine/threonine-protein kinase At1g09600 isoform X1
SwissprotF4I1140.0Y1960_ARATH; Probable serine/threonine-protein kinase At1g09600
TrEMBLA0A078E3350.0A0A078E335_BRANA; BnaA07g29410D protein
TrEMBLM4DI050.0M4DI05_BRARP; Uncharacterized protein
STRINGBra016132.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-63ERF family protein